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Operating system: Linux /Unix

Below are some pieces of code which I have spend a quite amount of time writing them. Please feel free to ask me for any additional toolkits related to my research.

Crop your velocity vector field files with this code. It computes the displacement vector field itself, so you don't have to worry about it :)

VTK crop

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Operating system: Linux/Unix

Up-sample your velocity vector field files with this code. It computes the displacement vector field itself and uses Trilinear Interpolation.

 

VTK up-sample

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Operating system: Linux/Unix

Pad your velocity vector field files with this code. 

VTK pad

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Operating system: Linux/Unix

Pad your velocity vector field files with this code.  The Mask should be an Analyze 7.5 image with the same dimension.

VTK mask

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Operating system: Linux/Unix

Simple code, computing the Mean Squared Error between two pain of Analyze 7.5 image volumes. Good for checking registration and ….

 

MSE between two image volumes

In this page, you can find various scripts for doing almost everything in image processing using Amira 3.x 4.x

Scripts for Amira 3.x, 4.x

Useful Codes