# CRNSimulator Mathematica Package

- Package: CRNSimulator.m
- Extensions: CRNSimulatorExtensions.m (needed for some more advanced features)
- Examples: Examples.nb

A Mathematica package for working with networks of coupled chemical reactions. It forms a foundation for syntactic manipulation of chemical reaction networks as Mathematica expressions. It allows mixing and matching mass-action kinetics with other kinds of dynamics, and provides a simple way to simulate experiments in which a sequence of chemical additions is performed. It is particularly well-suited for engineered chemical systems, in which chemical reaction networks can be used as a kind of "programming language".

See Examples.nb for the kind of things it can do.

Last modified: Jun 5 2016.

# CRNSimulatorSSA Mathematica Package [BETA]

- Package: CRNSimulatorSSA.m (requires CRNSimulator package)
- Examples: ExamplesSSA.nb

Extends CRNSimulator to perform Gillespie SSA simulation. The main simulation loop is compiled to C code for speed. Input reactions and initial counts using the same syntax as CRNSimulator.

See ExamplesSSA.nb for simple examples.

Last modified: Jan 3 2017.